Package: paco 0.4.2
paco: Procrustes Application to Cophylogenetic Analysis
Procrustes analyses to infer co-phylogenetic matching between pairs of phylogenetic trees.
Authors:
paco_0.4.2.tar.gz
paco_0.4.2.zip(r-4.5)paco_0.4.2.zip(r-4.4)paco_0.4.2.zip(r-4.3)
paco_0.4.2.tgz(r-4.4-any)paco_0.4.2.tgz(r-4.3-any)
paco_0.4.2.tar.gz(r-4.5-noble)paco_0.4.2.tar.gz(r-4.4-noble)
paco_0.4.2.tgz(r-4.4-emscripten)paco_0.4.2.tgz(r-4.3-emscripten)
paco.pdf |paco.html✨
paco/json (API)
# Install 'paco' in R: |
install.packages('paco', repos = c('https://matthutchinson1.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/matthutchinson1/paco/issues
Datasets:
- gl_links - Gopher-lice interactions
- gophertree - Gopher phylogeny
- licetree - Lice phylogeny
Last updated 4 years agofrom:9226b99067. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | NOTE | Oct 25 2024 |
R-4.5-linux | NOTE | Oct 25 2024 |
R-4.4-win | NOTE | Oct 25 2024 |
R-4.4-mac | NOTE | Oct 25 2024 |
R-4.3-win | NOTE | Oct 25 2024 |
R-4.3-mac | NOTE | Oct 25 2024 |
Exports:add_pcoordPACopaco_linksprepare_paco_dataresiduals_paco
Dependencies:apeclusterdigestlatticeMASSMatrixmgcvnlmepermuteplyrRcppvegan
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Principal Coordinates analysis of phylogenetic distance matrices | add_pcoord |
Gopher-lice interactions | gl_links |
Gopher phylogeny | gophertree |
Lice phylogeny | licetree |
Performs PACo analysis. | PACo |
Contribution of individual links | paco_links |
Prepares the data (distance matrices and association matrix) for PACo analysis | prepare_paco_data |
Return Procrustes residuals from a paco object | residuals_paco |